/  Publications 

Publications

2022

RII authors are marked with an asterisk(*); — indexed by Scopus; — indexed by Web of Science.

Research papers:

  1. A comparative analysis of the epidemiology of influenza and respiratory syncytial virus in Russia, 2013/14 to 2018/19
    Caini S., Stolyarov* K., Sominina* A., Smorodintseva* E., Staadegaard L., Paget J., Danilenko* D.
    Journal of Global Health — 2022. — Vol. 12. — Issue. . — pp. 4009-
    DOI: 10.7189/jogh.12.04009
  2. A New Intranasal Influenza Vector-Based Vaccine TB/FLU-04L Against Tuberculosis: Preclinical Safety Studies
    Buzitskaya* Z., Stosman* K., Khairullin B., Kassenov M., Nurpeisova A., Sansyzbay A.A., Shurygina* A.P., Aleksandrov* A., Sivak* K., Stukova* M.
    Drug Research — 2022. — Vol. . — Issue. . — pp. -
    DOI: 10.1055/a-1785-3936
  3. A novel method for multiplex protein biomarker analysis of human serum using quantitative MALDI mass spectrometry
    Taraskin* A.S., Semenov K.K., Lozhkov* A.A., Baranovskaya* I.L., Protasov* A.V., Ramsay* E.S., Tyulin A.A., Mirgorodskaya* O.A., Vasin* A.V., Klotchenko* S.A., Zabrodskaya* Y.A.
    Journal of Pharmaceutical and Biomedical Analysis — 2022. — Vol. 210. — Issue. . — pp. 114575-
    DOI: 10.1016/j.jpba.2021.114575
  4. Abietic, maleopimaric and quinopimaric dipeptide Ugi-4CR derivatives and their potency against influenza A and SARS-CoV-2
    Tretyakova E.V., Ma X., Kazakova O.B., Shtro* A.A., Petukhova* G.D., Smirnova A.A., Xu H., Xiao S.
    Natural Product Research — 2022. — Vol. . — Issue. . — pp. 1-7
    DOI: 10.1080/14786419.2022.2112040
  5. Alterations in B Cell and Follicular T-Helper Cell Subsets in Patients with Acute COVID-19 and COVID-19 Convalescents
    Kudryavtsev I.V., Isakov D.V., Batsunov O.K., Kuznetsova R.N., Rubinstein A.A., Stanevich* O.V., Lebedeva A.A., Vorobyov E.A., Vorobyova S.V., Kulikov A.N., Sharapova M.A., Pevtcov D.E., Totolian A.A., Arsentieva N.A., Korobova Z.R., Khamitova I.V.
    Current Issues in Molecular Biology — 2022. — Vol. 44. — Issue. 1. — pp. 194-205
    DOI: 10.3390/cimb44010014
  6. Analysis of the Safety and Immunogenicity Profile of an Azoximer Bromide Polymer-Adjuvanted Subunit Influenza Vaccine
    Kompier R., Neels P., Beyer W., Hardman T., Lioznov* D., Kharit S., Kostinov M.
    F1000Research — 2022. — Vol. 11. — Issue. . — pp. 259-
    DOI: 10.12688/f1000research.75869.1
  7. Clinical and phylogenetic influenza dynamics for the 2019-20 season in the global influenza hospital surveillance network (GIHSN) – Pilot study
    Quéromès G., Frobert E., Burtseva E., Drăgănescu A., Koul P.A., Komissarov* A., Alberto Laguna-Torres V., Leblanc J., Lopez-Labrador F-X., Medić S., Mironenko A., Otieno N.A., Ruiz-Palacios G.M., Tanriover B., NGS team - Lyon, GIHSN collaborators(...Bakaev* M., Danilenko* D., Fadeev* A., Pisareva* M., Sominina* A., ...), Josset L., Lina B.
    Journal of Clinical Virology — 2022. — Vol. 152. — Issue. . — pp. 105184-
    DOI: 10.1016/j.jcv.2022.105184
  8. COVID-19 pandemic in Saint Petersburg, Russia: Combining population-based serological study and surveillance data
    Barchuk A., Skougarevskiy D., Kouprianov A., Shirokov D., Dudkina O., Tursun-Zade R., Sergeeva* M., Tychkova* V., Komissarov* A., Zheltukhina* A., Lioznov* D., Isaev A., Pomerantseva E., Zhikrivetskaya S., Sofronova Y., Blagodatskikh K., Titaev K., Barabanova L., Danilenko* D.
    PloS one — 2022. — Vol. 17. — Issue. 6. — pp. e0266945-
    DOI: 10.1371/journal.pone.0266945
  9. CRISPR-Cas9 mediated knockout of AnxA6 gene enhances influenza A virus replication in low-permissive HEK293FT cell line
    Komissarov* A., Sergeeva* M., Zhuravlev E., Medvedev S., Malakhova A., Andreeva E., Shurygina* A.P., Gorshkov* A., Timofeeva M., Balakhonova E., Grudinin* M., Zakian S., Richter V., Stepanov G.
    Gene — 2022. — Vol. 809. — Issue. . — pp. 146024-
    DOI: 10.1016/j.gene.2021.146024
  10. Design and Immunological Properties of the Novel Subunit Virus-like Vaccine against SARS-CoV-2
    Krasilnikov* I.V., Kudriavtsev A.V., Vakhrusheva A.V., Frolova M.E., Ivanov A.V., Stukova* M.A., Romanovskaya-Romanko* E.A., Vasilyev* K.A., Mushenkova N.V., Isaev A.A.
    Vaccines — 2022. — Vol. 10. — Issue. 1. — pp. 69-
    DOI: 10.3390/vaccines10010069
  11. Development of a T Cell-Based COVID-19 Vaccine Using a Live Attenuated Influenza Vaccine Viral Vector
    Isakova-Sivak I., Stepanova E., Matyushenko V., Niskanen S., Mezhenskaya D., Bazhenova E., Krutikova E., Kotomina T., Prokopenko P., Neterebskii B., Doronin A., Vinogradova E., Yakovlev* K., Sivak* K., Rudenko L.
    Vaccines — 2022. — Vol. 10. — Issue. 7. — pp. 1142-
    DOI: 10.3390/vaccines10071142
  12. Efficacy and safety of an inactivated whole-virion vaccine against COVID-19, QazCovid-in®, in healthy adults: A multicentre, randomised, single-blind, placebo-controlled phase 3 clinical trial with a 6-month follow-up
    Sultankulova K., Chervyakova O., Myrzakhmetova B., Nakhanov A., Nurpeisova A., Zhugunissov K., Assanzhanova Nurikaa., Nurabayev S., Kerimbayev A. Yershebulov Z., Burashev Y., Kulmagambetov I., Davlyatshin T., Sergeeva* M., Buzitskaya* Z., Stukova* M., Kutumbetov L.
    EClinicalMedicine — 2022. — Vol. 50. — Issue. . — pp. 101526-
    DOI: 10.1016/j.eclinm.2022.101526
  13. Exosomes as Natural Nanocarriers for RNA-Based Therapy and Prophylaxis
    Gorshkov* A., Purvinsh* L., Brodskaia* A., Vasin* A.
    Nanomaterials — 2022. — Vol. 12. — Issue. 3. — pp. 524-
    DOI: 10.3390/nano12030524
  14. Fatty Acid Changes in Nearshore Phytoplankton under Anthropogenic Impact as a Biodiversity Risk Factor for the World’s Deepest Lake Baikal
    Nikonova A.A., Shishlyannikov* S.M., Volokitina N.A., Galachyants Y.P., Bukin Y.S., Blinov V.V., Gnatovsky R.Y., Vorobyeva S.S.
    Diversity — 2022. — Vol. 14. — Issue. 1. — pp. 55-
    DOI: 10.3390/d14010055
  15. Final efficacy analysis, interim safety analysis, and immunogenicity of a single dose of recombinant novel coronavirus vaccine (adenovirus type 5 vector) in adults 18 years and older: an international, multicentre, randomised, double-blinded, placebo-controlled phase 3 trial
    Halperin S.A., Ye L., MacKinnon-Cameron D., Smith B., Cahn P.E., Ruiz-Palacios G.M., Ikram A., Lanas F., Guerrero M.L., Navarro S.R.M., Sued O., Lioznov* D.A., Dzutseva V., Parveen G., Zhu F., Leppan L., Langley J.M., Barreto L., Gou J., Zhu T., for the CanSino COVID-19 Global Efficacy Study Group (Mao H.,..., Rozhkova* E., Zubkova* T.)
    The Lancet — 2022. — Vol. 399. — Issue. 10321. — pp. 237-248
    DOI: 10.1016/S0140-6736(21)02753-7
  16. Global, regional, and national disease burden estimates of acute lower respiratory infections due to respiratory syncytial virus in children younger than 5 years in 2019: a systematic analysis
    Li Y., Wang X., Blau D.M., Caballero M.T., Feikin D.R., Gill C.J., Madhi S.A., Omer S.B., Simões E.A.F., Campbell H., Bermejo Pariente A., Bardach D., Bassat Q., Casalegno J.-S., Chakhunashvili G., Crawford N., Danilenko* D., Lien Anh Ha Do, Echavarria M., Gentile A., Gordon A., Heikkinen T., Q Sue Huang†, Jullien S., Krishnan A., Lopez E.L., Markić J., Mira-Iglesias A., Moore H.C., Moyes J., Mwananyanda L., Nokes D.J., Noordeen F., Obodai E., Palani N., Romero C., Salimi V., Satav A., Seo E., Shchomak Z., Singleton R., Stolyarov* K., Stoszek S.K., von Gottberg A., Wurzel D., Lay-Myint Yoshida, Chee Fu Yung, Zar H.J., Respiratory Virus Global Epidemiology Network, Nair H., for the RESCEU investigators
    The Lancet — 2022. — Vol. . — Issue. . — pp. -
    DOI: 10.1016/S0140-6736(22)00478-0
  17. Heart Involvement in Multisystem Inflammatory Syndrome, Associated With COVID-19 in Children: The Retrospective Multicenter Cohort Data
    Kostik M.M., Bregel L.V., Avrusin I.S., Efremova O.S., Belozerov K.E., Dondurei* E.A., Kornishina T.L., Isupova E.A., Abramova N.N., Felker E.Y., Masalova V.V., Santimov A.V., Kozlov Yu.A., Barakin A.O., Snegireva L.S., Konstantinova J., Vilnits A.A., Bekhtereva M.K., Argunova V.M., Matyunova A.E., Sleptsova P.A., Burtseva T.E., Shprakh V.V., Boyko T.V., Kalashnikova O.V., Chasnyk V.G.
    Frontiers in Pediatrics — 2022. — Vol. 10. — Issue. . — pp. 829420-
    DOI: 10.3389/fped.2022.829420
  18. Hybrid Proteins with Short Conformational Epitopes of the Receptor-Binding Domain of SARS-CoV-2 Spike Protein Promote Production of Virus-Neutralizing Antibodies When Used for Immunization
    Karyagina A.S., Gromov A.V., Grunina T.M., Lyaschuk A.M., Poponova M.S., Kleymenov D.A., Strukova N.V., Generalova M.S., Ryazanova A.V., Galushkina Z.M., Dobrynina O.Y., Bolshakova T.N., Sergeeva* M.V., Romanovskaya-Romanko* E.A., Krasilnikov I.V., Subbotina M.E., Lunin V.G.
    Biochemistry — 2022. — Vol. 87. — Issue. 4. — pp. 319-330
    DOI: 10.1134/S0006297922040022
  19. Impact of illicit opioid use on markers of monocyte activation and systemic inflammation in people living with HIV
    Kholodnaia A., Lioznov* D., So-Armah K., Samet J.H., Cheng D., Gnatienko N., Patts G., Freiberg M.
    — 2022. — Vol. 17. — Issue. 5. — pp. e0265504-
    DOI: 10.1371/journal.pone.0265504
  20. Influenza A Virus Causes Histopathological Changes and Impairment in Functional Activity of Blood Vessels in Different Vascular Beds
    Marchenko* V., Zelinskaya I., Toropova Y., Shmakova T., Podyacheva E., Lioznov* D., Zhilinskaya I.N.
    Viruses — 2022. — Vol. 14. — Issue. 2. — pp. 396-
    DOI: 10.3390/v14020396
  21. Influenza B: Prospects for the Development of Cross-Protective Vaccines
    Tsybalova* L.M., Stepanova* L.A., Ramsay E.S., Vasin* A.V.
    Viruses — 2022. — Vol. 14. — Issue. 6. — pp. 1323-
    DOI: 10.3390/v14061323
  22. Influenza returns with a season dominated by clade 3C.2a1b.2a.2 A(H3N2) viruses, WHO European Region, 2021/22
    Melidou A., Ködmön C., Nahapetyan K., Kraus A., Alm E., Adlhoch C., Mooks P., Dave N., Carvalho C., Meslé M.M., Daniels R., Pebody R., Members of the WHO European Region influenza surveillance network (Tabain I., ..., Komissarov* A., Stolyarov* K., ..., Cottrell S.)
    Eurosurveillance — 2022. — Vol. 27. — Issue. 15. — pp. 2200255-
    DOI: 10.2807/1560-7917.ES.2022.27.15.2200255
  23. Investigation of the morphology and electrical properties of graphene used in the development of biosensors for detection of influenza viruses
    Shmidt N.M., Usikov A.S., Shabunina E.I., Nashchekin A.V., Gushchina E.V., Eliseev I.A., Petrov V.N., Puzyk M.V., Avdeev O.V., Klotchenko* S.A., Lebedev S.P., Tanklevskaya E.M., Makarov* Y.N., Lebedev A.A., Vasin* A.V.
    Biosensors — 2022. — Vol. 12. — Issue. 1. — pp. 8-
    DOI: 10.3390/bios12010008
  24. Nanoparticles based on artificial self-assembling peptide and displaying M2e peptide and stalk HA epitopes of influenza A virus induce potent humoral and T-cell responses and protect against the viral infection
    Zykova A.A., Blokhina E.A., Stepanova* L.A., Shuklina* M.A., Tsybalova* L.M., Kuprianov V.V., Ravin N.V.
    Nanomedicine: Nanotechnology, Biology and Medicine — 2022. — Vol. 39. — Issue. . — pp. 102463-
    DOI: 10.1016/j.nano.2021.102463
  25. PCSK9 as a Target for Development of a New Generation of Hypolipidemic Drugs
    Kuzmich* N., Andresyuk E., Porozov Y., Tarasov V., Samsonov M., Preferanskaya N., Veselov V., Alyautdin R.
    Molecules — 2022. — Vol. 27. — Issue. 2. — pp. 434-
    DOI: 10.3390/molecules27020434
  26. Preclinical Safety Evaluation: Acute and Repeated-Dose Toxicity of a New Intranasal Recombinant Vector Vaccine TB/FLU-04L Against Tuberculosis
    Stosman K., Sivak K., Aleksandrov A., Buzitskaya Z., Rassokha T., Stukova M.
    Drug Research — 2022. — Vol. 72. — Issue. 4. — pp. 215-219
    DOI: 10.1055/a-1771-5985
  27. Protective effect of aminoguanidine against acute lung injury induced by influenza (H1N1)pdm09 (mouseadapted) virus in mice with diabetes mellitus
    Aleksandrov* A.G., Savateeva-Lyubimova* T.N., Sivak* K.V., Stosman* K.I., Zhilinskaya* I.N.
    Journal of Research in Pharmacy — 2022. — Vol. 26. — Issue. 3. — pp. 523-533
    DOI: 10.29228/jrp.149
  28. Protein and Peptide Substances in the Treatment of Respiratory Syncytial Infection: Current State
    Shtro* A.A., Petukhova* G.D., Romanova* A.S.
    Molecules — 2022. — Vol. 27. — Issue. 7. — pp. 2263-
    DOI: 10.3390/molecules27072263
  29. Resurgence of Influenza Circulation in the Russian Federation during the Delta and Omicron COVID-19 Era
    Sominina* A., Danilenko* D., Komissarov* A., Karpova* L., Pisareva* M., Fadeev* A., Konovalova* N., Eropkin* M., Stolyarov* K., Shtro* A., Burtseva E., Lioznov* D.
    Viruses — 2022. — Vol. 14. — Issue. 9. — pp. 1909-
    DOI: 10.3390/v14091909
  30. SARS-CoV-2 Subunit Virus-like Vaccine Demonstrates High Safety Profile and Protective Efficacy: Preclinical Study
    Vakhrusheva A.V., Kudriavtsev A.V., Kryuchkov N.A., Deev R.V., Frolova M.E., Blagodatskikh K.A., Djonovic M., Nedorubov A.A., Odintsova E., Ivanov A.V., Romanovskaya-Romanko* E.A., Stukova* M.A., Isaev A.A., Krasilnikov* I.V.
    — 2022. — Vol. 10. — Issue. 8. — pp. 1290-
    DOI: 10.3390/vaccines10081290
  31. Simultaneous detection of RIG-1, MDA5, AND IFIT-1 expression is a convenient tool for evaluation of the interferon-mediated response
    Lozhkov* A.A., Plotnikova* M.A., Egorova* M.A., Baranovskaya* I.L., Elpaeva* E.A., Klotchenko* S.A., Vasin* A.V.
    Viruses — 2022. — Vol. 14. — Issue. 10. — pp. 2090-
    DOI: 10.3390/v14102090
  32. Stigma and ART initiation among people with HIV and a lifetime history of illicit drug use in Saint-Petersburg, Russia–A prospective cohort analysis
    Vetrova M., Lodi S., Rateau L., Patts G., Blokhina E., Palatkin V., Yaroslavtseva T., Toussova O., Bushara N., Bendiks S., Gnatienko N., Krupitsky E., Lioznov* D., Samet J., Lunze K.
    International Journal of Drug Policy — 2022. — Vol. 102. — Issue. . — pp. 103600-
    DOI: 10.1016/j.drugpo.2022.103600
  33. Synthesis and evaluation of diterpenic Mannich bases as antiviral agents against influenza A and SARS-CoV-2
    Tretyakova E.V., Ma X., Kazakova O.B., Shtro* A.A., Petukhova* G.D., Klabukov* A.M., Dyatlov D.S., Smirnova A.A., Xu H., Xiao S.
    Phytochemistry Letters — 2022. — Vol. 51. — Issue. . — pp. 91-96
    DOI: 10.1016/j.phytol.2022.07.010
  34. Synthesis, Phosphonylation, and Anti-Viral Activity of Some 6-Aryl-5-cyano-2-thiouracils
    Babushkina A.A., Piterskaya Yu. L., Shtro* A.A., Nikolaeva* Yu.V., Galochkina* A.V., Klabukov* A.M., Egorov D.M.
    Russian Journal of General Chemistry — 2022. — Vol. 92. — Issue. 1. — pp. 18-23
    DOI: 10.1134/S1070363222010042
  35. The Rise and Spread of the SARS-CoV-2 AY.122 Lineage in Russia
    Klink G., Safina K., Nabieva E., Shvyrev N., Garushyants S., Alekseeva E.I., Komissarov* A., Danilenko* D., Pochtovyy A., Divisenko E., Vasilchenko L., Shidlovskaya E., Kuznetsova N., Speranskaya A., Samoilov A., Neverov A., Popova A., Fedonin G., Akimkin V., Lioznov* D., Gushchin V., Shchur V., Bazykin G.
    Virus Evolution — 2022. — Vol. . — Issue. . — pp. -
    DOI: 10.1093/ve/veac017
  36. Toward a Home Test for COVID-19 Diagnosis: DNA Machine for Amplification-Free SARS-CoV-2 Detection in Clinical Samples
    El-Deeb A.A., Zablotskaya S.S., Rubel M.S., Nour M.A.Y., Kozlovskaya L.I., Shtro* A.A., Komissarov* A.B., Kolpashchikov D.M.
    ChemMedChem — 2022. — Vol. . — Issue. . — pp. -
    DOI: 10.1002/cmdc.202200382
  37. Two Novel Lytic Bacteriophages Infecting Enterococcus spp. Are Promising Candidates for Targeted Antibacterial Therapy
    Tkachev P.V., Pchelin I.M., Azarov, D.V., Gorshkov* A.N., Shamova O.V., Dmitriev A.V., Goncharov A.E.
    Viruses — 2022. — Vol. 14. — Issue. 4. — pp. 831-
    DOI: 10.3390/v14040831
  38. Unlocking capacities of genomics for the COVID-19 response and future pandemics
    Knyazev S., Pasaniuc B., Chhugani K., Deshpande D., Lu A., Sarwal V., Ayyala R., Singh H., Karthikeyan S., Knight R., Baykal P.I., Beerenwinkel N., Comarova Z., Smith A.L., Porozov Y., Vasylyeva T.I., Wertheim J.O., Tierney B.T., Mason C.E., Chiu C.Y., Sun R., Wu A., Abedalthagafi M.S., Pak V.M., Nagaraj S.H., Smith A.L., Skums P., Pasaniuc B., Komissarov* A., Mason C.E., Bortz E., Lemey P., Kondrashov F., Beerenwinkel N., Lam T.T., Wu N.C., Zelikovsky A., Knight R., Crandall K.A., Mangul S.
    Nature Methods — 2022. — Vol. 19. — Issue. 4. — pp. 374-380
    DOI: 10.1038/s41592-022-01444-z
  39. Urinary Albumin-Creatinine Ratio and renal Function after Nephrectomy
    Popov S., Guseynov R., Sivak* K., Perepelitsa V., Katunin A., Zaitsev A.
    Kidney International Reports — 2022. — Vol. 7. — Issue. 2. — pp. 181-
    DOI: 10.1016/j.ekir.2022.01.425
  40. VH3-53/66-Class RBD-Specific Human Monoclonal Antibody iB20 Displays Cross-Neutralizing Activity against Emerging SARS-CoV-2 Lineages
    Kulemzin S.V, Sergeeva* M.V., Baranov K.O., Gorchakov A.A., Guselnikov S.V., Belovezhets T.N., Volkova O.Yu., Najakshin A.M., Chikaev N.A., Danilenko* D.M., Taranin A.V.
    Journal of Personalized Medicine — 2022. — Vol. 12. — Issue. 6. — pp. 895-
    DOI: 10.3390/jpm12060895
  41. hylotravis: a new approach to visualization of the phylogenetic tree
    Forghani M., Vasev P.A., Bersenev A.Y., Bolkov M.A., Ramsay* E.S.
    Programming and Computer Software — 2022. — Vol. 48. — Issue. 3. — pp. 215-226
    DOI: 10.1134/S0361768822030045